5VGB

Crystal structure of NmeCas9 HNH domain bound to anti-CRISPR AcrIIC1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.164

Literature

Macromolecules
Sequence Display for 5VGB

Classification: HYDROLASE / HYDROLASE inhibitor

Total Structure Weight: 26816.00

Macromolecule Entities
Molecule Chains Length Organism Details
CRISPR-associated endonuclease Cas9 A 142 Neisseria meningitidis EC#: 3.1 IUBMB
Fragment: HNH domain (UNP residues 518-655)
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Anti-CRISPR protein (AcrIIC1) B 86 Neisseria meningitidis

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.164
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 46.16 α = 90.00
b = 60.49 β = 90.00
c = 77.32 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-04-10
  • Released Date: 2017-08-30
  • Deposition author(s): Harrington, L.B., Doxzen, K.W., Ma, E., Knott, G.J., Kranzusch, P.J., Doudna, J.A.

Revision History

  • 2017-09-13
    Type: Database references
  • 2017-09-20
    Type: Database references