5VFB

1.36 Angstrom Resolution Crystal Structure of Malate Synthase G from Pseudomonas aeruginosa in Complex with Glycolic Acid.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.36 Å
  • R-Value Free: 0.168
  • R-Value Work: 0.143

Literature

Macromolecules
Sequence Display for 5VFB

Classification: TRANSFERASE

Total Structure Weight: 158720.25

Macromolecule Entities
Molecule Chains Length Organism Details
Malate synthase G A, B 728 Pseudomonas aeruginosa EC#: 2.3.3.9 IUBMB
Gene Name(s): glcB PA0482
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOA
Query on GOA

A, B GLYCOLIC ACID
HYDROXYACETIC ACID; HYDROXYETHANOIC ACID (Synonym)
C2 H4 O3
AEMRFAOFKBGASW-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NI
Query on NI

A, B NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.36 Å
  • R-Value Free: 0.168
  • R-Value Work: 0.143
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 63.38 α = 90.00
b = 111.71 β = 100.42
c = 96.95 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-04-07
  • Released Date: 2017-04-19
  • Deposition author(s): Minasov, G., Shuvalova, L., Dubrovska, I., Kiryukhina, O., Grimshaw, S., Kwon, K., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

No revisions since initial release