5VEW

Structure of the human GLP-1 receptor complex with PF-06372222


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.228

Literature

Macromolecules
Sequence Display for 5VEW

Classification: SIGNALING PROTEIN

Total Structure Weight: 108627.26

Macromolecule Entities
Molecule Chains Length Organism Details
Glucagon-like peptide 1 receptor,Endolysin chimera A, B 455 Homo sapiens Enterobacteria phage t4 sensu lato EC#: 3.2.1.17 IUBMB
Mutation: S193C, I196F, Y212G, ΔT207, ΔA208, ΔA209, ΔQ210, ΔQ211, ΔH212, ΔQ213, W214G, S225A, M233X, R1012G, C1054T, C1097A, I1137R, S271A, I317C, G318I, K346A, C347F, G361C
Gene Name(s): E GLP1R Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: G Protein-Coupled Receptors (GPCRs)

Protein Name: Class B GPCR glucagon receptor


Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
97Y
Query on 97Y

A, B N-{4-[(R)-(3,3-dimethylcyclobutyl)({6-[4- (trifluoromethyl)-1H-imidazol-1-yl]pyridin- 3-yl}amino)methyl]benzene-1-carbonyl}-beta- alanine
C26 H28 F3 N5 O3
MYZIDYJMNWEJMC-QHCPKHFHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
OLC
Query on OLC

A, B (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
1-Oleoyl-R-glycerol (Synonym)
C21 H40 O4
RZRNAYUHWVFMIP-GDCKJWNLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
OLA
Query on OLA

A OLEIC ACID
C18 H34 O2
ZQPPMHVWECSIRJ-KTKRTIGZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CSD
Query on CSD
A, B L-PEPTIDE LINKING C3 H7 N O4 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.228
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 64.77 α = 90.54
b = 66.43 β = 90.18
c = 83.44 γ = 107.73

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-04-05
  • Released Date: 2017-05-24
  • Deposition author(s): Song, G., Yang, D., Wang, Y., Graaf, C.D., Zhou, Q., Jiang, S., Liu, K., Cai, X., Dai, A., Lin, G., Liu, D., Wu, F., Wu, Y., Zhao, S., Ye, L., Han, G.W., Lau, J., Wu, B., Hanson, M.A., Liu, Z.-J., Wang, M.-W., Stevens, R.C.

Revision History

  • Version 1_0: 2017-05-24

    Type: Initial release

  • Version 1_1: 2017-05-31

    Type: Database references

  • Version 1_2: 2017-06-14

    Type: Database references