5VD6

Crystal structure of a GNAT superfamily acetyltransferase PA4794 in complex with bisubstrate analog 6


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Free: 0.163
  • R-Value Work: 0.132

Literature

Macromolecules
Sequence Display for 5VD6

Classification: transferase / transferase inhibitor

Total Structure Weight: 19648.85

Macromolecule Entities
Molecule Chains Length Organism Details
acetyltransferase PA4794 A 162 Pseudomonas aeruginosa Gene Name(s): PA4794
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
93P
Query on 93P

A (3R,5S,9R,23S)-1-[(2R,3S,4R,5R)-5-(6-amino- 9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran- 2-yl]-3,5,9-trihydroxy-8,8-dimethyl-10,14- dioxo-23-({[(phenylacetyl)amino]acetyl}amino)- 2,4,6-trioxa-18-thia-11,15-diaza-3,5-diphosphatetracosan- 24-oic acid 3,5-dioxide (non-preferred name)
C37 H56 N9 O20 P3 S
OMXLQYGFXWCBIK-IRRLZKHESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Free: 0.163
  • R-Value Work: 0.132
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 57.09 α = 90.00
b = 76.15 β = 90.00
c = 38.98 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-04-01
  • Released Date: 2017-07-26
  • Deposition author(s): Majorek, K.A., Joachimiak, A., Minor, W., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2017-08-23
    Type: Database references