5VBJ

Sulfur as a bromine biomolecular halogen-bond acceptor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.218

Literature

Macromolecules
Sequence Display for 5VBJ

Classification: DNA

Total Structure Weight: 6291.96

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*CP*GP*AP*TP*(AS)P*(BRU)P*CP*GP*G)-3') A, B 10 Synthetic construct

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
AS
Query on AS
A, B DNA LINKING C10 H14 N5 O5 P S DA
BRU
Query on BRU
A, B DNA LINKING C9 H12 Br N2 O8 P DU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.218
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 64.17 α = 90.00
b = 23.98 β = 112.32
c = 37.81 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-03-29
  • Released Date: 2017-08-09
  • Deposition author(s): Ford, M.C., Ho, P.S.

Revision History

No revisions since initial release