5V5E

Room temperature (280K) crystal structure of Kaposi's sarcoma-associated herpesvirus protease in complex with allosteric inhibitor (compound 733)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 5V5E

Classification: VIRAL PROTEIN / INHIBITOR

Total Structure Weight: 43926.75

Macromolecule Entities
Molecule Chains Length Organism Details
ORF 17 A, B 193 Human gammaherpesvirus 8 Fragment: residues 23-215
Gene Name(s): ORF17
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
8N4
Query on 8N4

A, B 4-{[6-(cyclohexylmethyl)pyridine-2-carbonyl]amino}- 3-{[3-(trifluoromethoxy)phenyl]amino}benzoic acid
C27 H26 F3 N3 O4
OQQHKPTYNRWLGC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.199
  • Space Group: I 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 73.40 α = 90.00
b = 96.84 β = 90.00
c = 119.08 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-03-14
  • Released Date: 2017-04-12
  • Deposition author(s): Thompson, M.C., Acker, T.M., Fraser, J.S., Craik, C.S.

Revision History

  • 2017-08-16
    Type: Database references