5V0P

Crystal Structure of Beta-ketoacyl-ACP synthase III-2 (FabH2) (C113A) from Vibrio Cholerae co-crystallized with octanoyl-CoA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.16 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.174

Literature

Macromolecules
Sequence Display for 5V0P

Classification: TRANSFERASE

Total Structure Weight: 79905.67

Macromolecule Entities
Molecule Chains Length Organism Details
3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 A, B 362 Vibrio cholerae EC#: 2.3.1.180 IUBMB
Mutation: C113A
Gene Name(s): fabH2 VC_A0751
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CO8
Query on CO8

A, B OCTANOYL-COENZYME A
C29 H50 N7 O17 P3 S
KQMZYOXOBSXMII-CECATXLMSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 85.32 α = 90.00
b = 61.89 β = 93.18
c = 75.73 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-02-28
  • Released Date: 2017-03-22
  • Deposition author(s): Hou, J., Zheng, H., Cooper, D.R., Grabowski, M., Anderson, W.F., Minor, W., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

No revisions since initial release