5V0L

Crystal structure of the AHR-ARNT heterodimer in complex with the DRE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.0 Å
  • R-Value Free: 0.323
  • R-Value Work: 0.285

Literature

Macromolecules
Sequence Display for 5V0L

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 68323.52


Macromolecule Entities
Molecule Chains Length Organism Details
Aryl hydrocarbon receptor nuclear translocator A 279 Homo sapiens Gene Name(s): ARNT Gene View BHLHE2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Aryl hydrocarbon receptor B 241 Mus musculus Gene Name(s): Ahr
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(P*GP*GP*AP*TP*TP*GP*CP*GP*TP*GP*AP*GP*AP*AP*CP*TP*G)-3') C 17 Homo sapiens
DNA (5'-D(P*AP*GP*TP*TP*CP*TP*CP*AP*CP*GP*CP*AP*AP*T)-3') D 14 Homo sapiens

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CIT
Query on CIT

B, C CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEG
Query on PEG

A, B DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.0 Å
  • R-Value Free: 0.323
  • R-Value Work: 0.285
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 78.20 α = 90.00
b = 64.36 β = 100.14
c = 157.73 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-02-28
  • Released Date: 2017-04-19
  • Deposition author(s): Seok, S.-H., Lee, W., Jiang, L., Bradfield, C.A., Xing, Y.

Revision History

  • 2017-04-26
    Type: Database references
  • 2017-06-07
    Type: Database references