5USD

Crystal structure of MccF-like protein (BA_5613) in the complex with aspartyl sulfamoyl adenylate

Structural Biology Knowledgebase: 5USD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.182

Literature

Macromolecules
Sequence Display for 5USD

Classification: HYDROLASE

Total Structure Weight: 151010.17

Macromolecule Entities
Molecule Chains Length Organism Details
Peptidase S66 A, B, C, D 330 Bacillus anthracis Gene Name(s): yocD GBAA_5613 AB163_00515 AB164_26125 AB165_28305 AB166_13475 AB167_17310 AB168_11590 AB169_27685 AB170_21380 AB171_25310 AB893_27325 ADK18_27090 ADT20_13800 ADT21_02055 BASH2_00378 BF27_2143
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DSZ
Query on DSZ

A, B, C, D 5'-O-(L-alpha-aspartylsulfamoyl)adenosine
C14 H19 N7 O9 S
KMRBRMHHDAUXAY-UFIIOMENSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, C GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.182
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 74.46 α = 90.00
b = 85.81 β = 92.32
c = 124.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-02-13
  • Released Date: 2017-03-15
  • Deposition author(s): Nocek, B., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

No revisions since initial release