5UQD

DPY-21 in complex with Fe(II) and alpha-Ketoglutarate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.163

Literature

Macromolecules
Sequence Display for 5UQD

Classification: OXIDOREDUCTASE

Total Structure Weight: 51074.01

Macromolecule Entities
Molecule Chains Length Organism Details
DumPY: shorter than wild-type A 442 Caenorhabditis elegans Fragment: residues 1210-1617
Gene Name(s): dpy-21 Y59A8B.1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AKG
Query on AKG

A 2-OXOGLUTARIC ACID
C5 H6 O5
KPGXRSRHYNQIFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PG0
Query on PG0

A 2-(2-METHOXYETHOXY)ETHANOL
PEG 6000 (Synonym)
C5 H12 O3
SBASXUCJHJRPEV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE2
Query on FE2

A FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.163
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 87.63 α = 90.00
b = 97.88 β = 90.00
c = 98.84 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-02-07
  • Released Date: 2017-09-13
  • Deposition author(s): Brejc, K., Bian, Q., Uzawa, S., Wheeler, B.S., Anderson, E.C., King, D.S., Kranzusch, P., Preston, C.G., Meyer, B.J.

Revision History

No revisions since initial release