5UOQ

CRYSTAL STRUCTURE OF THE PROTOTYPE FOAMY VIRUS INTASOME WITH A 2- PYRIDINONE AMINAL INHIBITOR (COMPOUND 31)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.61 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 5UOQ

Classification: TRANSFERASE / DNA / INHIBITOR

Total Structure Weight: 101335.46


Macromolecule Entities
Molecule Chains Length Organism Details
INTEGRASE A, B 395 Simian foamy virus EC#: 2.7.7 IUBMB
Mutation: G217S, S218G
Gene Name(s): pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
NUCLEOTIDE PREPROCESSED PFV DONOR DNA (NON-TRANSFERRED STRAND) C 19 Simian foamy virus
NUCLEOTIDE PREPROCESSED PFV DONOR DNA (TRANSFERRED STRAND) D 17 Simian foamy virus

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
8G1
Query on 8G1

A (3R)-8-[(3-chloro-4-fluorophenyl)methyl]- 6-hydroxy-1,5,7-trioxo-1,2',3',5,7,8,9,10- octahydro-2H-spiro[imidazo[5,1-a][2,6]naphthyridine- 3,1'-indene]-7'-carbonitrile
C26 H18 Cl F N4 O4
SQZXRPGADVRSDB-AREMUKBSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B, C GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.61 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.199
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 159.51 α = 90.00
b = 159.51 β = 90.00
c = 123.82 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-02-01
  • Released Date: 2017-03-29
  • Deposition author(s): Klein, D.J.

Revision History

  • 2017-04-19
    Type: Citation | Details: Citation