5UM9

Flap endonuclease 1 (FEN1) D86N with 5'-flap substrate DNA and Sm3+


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.81 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.208

Literature

Macromolecules
Sequence Display for 5UM9

Classification: Hydrolase / DNA

Total Structure Weight: 52102.46


Macromolecule Entities
Molecule Chains Length Organism Details
Flap endonuclease 1 A 341 Homo sapiens EC#: 3.1 IUBMB
Mutation: D86N
Details: Mutation D86N
Gene Name(s): FEN1 Gene View RAD2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*AP*CP*TP*CP*TP*GP*CP*CP*TP*CP*AP*AP*GP*AP*CP*GP*GP*T)-3') D 18 Synthetic construct
DNA (5'-D(P*TP*CP*TP*TP*GP*AP*GP*GP*CP*AP*GP*AP*GP*T)-3') E 17 Synthetic construct
DNA (5'-D(*AP*CP*CP*GP*TP*CP*C)-3') F 7 Synthetic construct

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SM
Query on SM

A SAMARIUM (III) ION
Sm
DOSGOCSVHPUUIA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

A POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.81 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.208
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 105.85 α = 90.00
b = 105.85 β = 90.00
c = 100.71 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-01-26
  • Released Date: 2017-06-28
  • Deposition author(s): Tsutakawa, S.E., Arvai, A.S., Tainer, J.A.

Revision History

  • 2017-07-12
    Type: Database references