5UFH

The crystal structure of a LacI-type transcription regulator from Bifidobacterium animalis subsp. lactis DSM 10140


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.165

Literature

Macromolecules
Sequence Display for 5UFH

Classification: TRANSCRIPTION

Total Structure Weight: 40174.34

Macromolecule Entities
Molecule Chains Length Organism Details
LacI-type transcriptional regulator A 347 Bifidobacterium animalis Gene Name(s): BLA_0054
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NO3
Query on NO3

A NITRATE ION
N O3
NHNBFGGVMKEFGY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET
CSO
Query on CSO
A L-PEPTIDE LINKING C3 H7 N O3 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.165
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 72.33 α = 90.00
b = 60.17 β = 109.22
c = 67.19 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-01-04
  • Released Date: 2017-01-18
  • Deposition author(s): Tan, K., Li, H., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • Version 1_0: 2017-01-18

    Type: Initial release

  • Version 1_1: 2017-09-13

    Type: Author supporting evidence