5UF7

CRYSTAL STRUCTURE OF MUNC13-1 MUN DOMAIN


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.228 
  • R-Value Observed: 0.230 

wwPDB Validation   3D Report Full Report


This is version 1.6 of the entry. See complete history

Re-refinement Note

This entry reflects an alternative modeling of the original data in: 4Y21


Literature

Mechanistic insights into neurotransmitter release and presynaptic plasticity from the crystal structure of Munc13-1 C1C2BMUN.

Xu, J.Camacho, M.Xu, Y.Esser, V.Liu, X.Trimbuch, T.Pan, Y.Z.Ma, C.Tomchick, D.R.Rosenmund, C.Rizo, J.

(2017) Elife 6

  • DOI: https://doi.org/10.7554/eLife.22567
  • Primary Citation of Related Structures:  
    5UE8, 5UF7

  • PubMed Abstract: 

    Munc13-1 acts as a master regulator of neurotransmitter release, mediating docking-priming of synaptic vesicles and diverse presynaptic plasticity processes. It is unclear how the functions of the multiple domains of Munc13-1 are coordinated. The crystal structure of a Munc13-1 fragment including its C 1 , C 2 B and MUN domains (C 1 C 2 BMUN) reveals a 19.5 nm-long multi-helical structure with the C 1 and C 2 B domains packed at one end. The similar orientations of the respective diacyglycerol- and Ca 2+ -binding sites of the C 1 and C 2 B domains suggest that the two domains cooperate in plasma-membrane binding and that activation of Munc13-1 by Ca 2+ and diacylglycerol during short-term presynaptic plasticity are closely interrelated. Electrophysiological experiments in mouse neurons support the functional importance of the domain interfaces observed in C 1 C 2 BMUN. The structure imposes key constraints for models of neurotransmitter release and suggests that Munc13-1 bridges the vesicle and plasma membranes from the periphery of the membrane-membrane interface.


  • Organizational Affiliation

    Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, United States.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein unc-13 homolog A547Rattus norvegicusMutation(s): 0 
Gene Names: Unc13aUnc13h1
UniProt
Find proteins for Q62768 (Rattus norvegicus)
Explore Q62768 
Go to UniProtKB:  Q62768
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ62768
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.228 
  • R-Value Observed: 0.230 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 114.062α = 90
b = 270.921β = 90
c = 47.735γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2017-02-15
    Type: Initial release
  • Version 1.1: 2017-04-19
    Changes: Data collection, Database references, Experimental preparation, Other
  • Version 1.2: 2018-02-21
    Changes: Advisory, Database references
  • Version 1.3: 2018-03-28
    Changes: Data collection, Database references
  • Version 1.4: 2022-04-13
    Changes: Database references
  • Version 1.5: 2022-04-27
    Changes: Advisory
  • Version 1.6: 2023-10-04
    Changes: Data collection, Refinement description