5UEJ

1.30 A crystal structure of DapE enzyme from Neisseria meningitidis MC58

Structural Biology Knowledgebase: 5UEJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.153
  • R-Value Work: 0.113

Literature

Macromolecules
Sequence Display for 5UEJ

Classification: HYDROLASE

Total Structure Weight: 84099.11

Macromolecule Entities
Molecule Chains Length Organism Details
Succinyl-diaminopimelate desuccinylase A, B 384 Neisseria meningitidis EC#: 3.5.1.18 IUBMB
Gene Name(s): dapE NMB1530
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.153
  • R-Value Work: 0.113
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 74.77 α = 90.00
b = 88.64 β = 90.00
c = 133.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-01-02
  • Released Date: 2017-02-01
  • Deposition author(s): Nocek, B., Joachimiak, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • 2017-02-08
    Type: Citation | Details: Citation
  • 2017-02-08
    Type: Entry authorship | Details: Entry authorship