5UDK

IFIT1 monomeric mutant (L457E/L464E) with PPP-AAAA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.164

Literature

Macromolecules
Sequence Display for 5UDK

Classification: RNA BINDING PROTEIN

Total Structure Weight: 57544.84


Macromolecule Entities
Molecule Chains Length Organism Details
Interferon-induced protein with tetratricopeptide repeats 1 A 479 Homo sapiens Mutation: L457E, L464E
Gene Name(s): IFIT1 Gene View G10P1 IFI56 IFNAI1 ISG56
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-D(*(ATP))-R(P*AP*AP*A)-3') B 4 Unidentified

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PGE
Query on PGE

A TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEG
Query on PEG

A DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
ATP
Query on ATP
B NON-POLYMER C10 H16 N5 O13 P3 --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.164
  • Space Group: P 42 2 2

Unit Cell:

Length (Å) Angle (°)
a = 112.43 α = 90.00
b = 112.43 β = 90.00
c = 93.17 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-12-27
  • Released Date: 2017-03-01
  • Deposition author(s): Abbas, Y.M., Martinez-Montero, S., Damha, M.J., Nagar, B.

Revision History

  • 2017-03-15
    Type: Database references
  • 2017-03-22
    Type: Database references