5UAN

Crystal structure of multi-domain RAR-beta-RXR-alpha heterodimer on DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.51 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.221

Literature

Macromolecules
Sequence Display for 5UAN

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 99768.27


Macromolecule Entities
Molecule Chains Length Organism Details
Retinoic acid receptor RXR-alpha A 365 Homo sapiens Fragment: UNP residues 98-462
Gene Name(s): RXRA Gene View NR2B1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Retinoic acid receptor beta B 397 Homo sapiens Fragment: UNP residues 98-462
Gene Name(s): RARB Gene View HAP NR1B2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Nuclear receptor coactivator 2 C, D 10 Homo sapiens Fragment: UNP residues 687-696
Gene Name(s): NCOA2 Gene View BHLHE75 SRC2 TIF2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*TP*AP*GP*GP*TP*CP*AP*AP*AP*GP*GP*TP*CP*AP*GP*C)-3') E 17 Homo sapiens
DNA (5'-D(*GP*CP*TP*GP*AP*CP*CP*TP*TP*TP*GP*AP*CP*CP*TP*AP*G)-3') F 17 Homo sapiens

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
REA
Query on REA

B RETINOIC ACID
C20 H28 O2
SHGAZHPCJJPHSC-YCNIQYBTSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
9CR
Query on 9CR

A (9cis)-retinoic acid
C20 H28 O2
SHGAZHPCJJPHSC-ZVCIMWCZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.51 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.221
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 52.47 α = 90.00
b = 77.40 β = 90.37
c = 112.11 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2016-12-19
  • Released Date: 2017-10-18
  • Deposition author(s): Chandra, V., Wu, D., Kim, Y., Rastinejad, F.

Revision History

  • Version 1_0: 2017-10-18

    Type: Initial release