5U0Q

RNA-DNA heptamer duplex with one 2'-5'-linkage


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.43 Å
  • R-Value Free: 0.177
  • R-Value Work: 0.153

Literature

Macromolecules
Sequence Display for 5U0Q

Classification: RNA DNA

Total Structure Weight: 8963.40

Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*UP*AP*GP*CP*UP*CP*C)-3') A, C 7 Unidentified
DNA/RNA (5'-R(*GP*GP*AP*GP*C)-D(P*T)-R(P*A)-3') B, D 7 Unidentified

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CO
Query on CO

C COBALT (II) ION
Co
XLJKHNWPARRRJB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

B, C, D MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.43 Å
  • R-Value Free: 0.177
  • R-Value Work: 0.153
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 26.55 α = 90.00
b = 52.92 β = 96.05
c = 27.62 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2016-11-26
  • Released Date: 2017-11-29
  • Deposition author(s): Luo, Z., Sheng, J.

Revision History

  • Version 1_0: 2017-11-29

    Type: Initial release