5U04

Crystal structure of Zika virus NS5 RNA-dependent RNA polymerase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.179

Literature

Macromolecules
Sequence Display for 5U04

Classification: VIRAL PROTEIN

Total Structure Weight: 69245.41

Macromolecule Entities
Molecule Chains Length Organism Details
Zika Virus NS5 RdRp A 598 Zika virus Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.179
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 78.95 α = 90.00
b = 78.95 β = 90.00
c = 210.02 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-11-22
  • Released Date: 2017-02-22
  • Deposition author(s): Godoy, A.S., Lima, G.M.A., Oliveira, K.I.Z., Torres, N.U., Maluf, F.V., Guido, R.V.C., Oliva, G.
  • This entry supercedes: 5TIT

Revision History

  • Version 1_0: 2017-02-22

    Type: Initial release

  • Version 1_1: 2017-03-29

    Type: Structure summary

  • Version 1_2: 2017-04-05

    Type: Database references

  • Version 1_3: 2017-04-12

    Type: Database references

  • Version 1_4: 2017-04-26

    Type: Data collection