5TSL

Molecular Dynamics Flexible Fitting Model of Coxsackievirus A16 empty Procapsid VP3 Subunit

• PDB DOI: https://doi.org/10.2210/pdb5TSL/pdb
• EM Map EMD-8325: EMDB EMDataResource

• Classification: VIRUS
• Organism(s): Coxsackievirus A16
• Mutation(s): No 


• Deposited: 2016-10-29 Released: 2017-02-01 
• Deposition Author(s): Fan, C., Cong, Y., Ye, X., Huang, Z.

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 6.50 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Structural alteration and surface modifi cation of coxsackievirus A16 capsids by beta-propiolactone treatment

Chen, F., Ye, X., Ku, Z.I., Kong, L.l., Liu, Q., Xu, C., Cong, Y., Huang, Z.

(2017) J Virol 

Biological Assembly 1  

Global Symmetry: Icosahedral - I  (Explore in 3D)
Global Stoichiometry: Homo 60-mer - A60 

Biological assembly 1 assigned by authors and generated by (software)

Macromolecule Content

• Total Structure Weight: 26.65 kDa 
• Atom Count: 1,771 
• Modelled Residue Count: 229 
• Deposited Residue Count: 242 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
coxsackievirus A16	A [auth C]	242	Coxsackievirus A16	Mutation(s): 0
UniProt
Find proteins for A9LXZ4 (Coxsackievirus A16) Explore A9LXZ4  Go to UniProtKB:  A9LXZ4

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 6.50 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	jspr
MODEL REFINEMENT	NAMD	2.1

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-02-01 
Deposition Author(s): Fan, C., Cong, Y., Ye, X., Huang, Z.

Revision History  

• Version 1.0: 2017-02-01
  Type: Initial release
  
• Version 1.1: 2019-10-23
  Changes: Data collection, Other
• Version 1.2: 2024-03-20
  Changes: Data collection, Database references, Derived calculations, Refinement description