5TSH

PilB from Geobacter metallireducens bound to AMP-PNP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.184

Literature

Macromolecules
Sequence Display for 5TSH

Classification: ATP-BINDING PROTEIN

Total Structure Weight: 392631.75

Macromolecule Entities
Molecule Chains Length Organism Details
Type IV pilus biogenesis ATPase PilB A, B, C..., D, E, FA, B, C, D, E, F 588 Geobacter metallireducens Mutation: A482G
Gene Name(s): pilB Gmet_1393
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ANP
Query on ANP

A, B, C, D PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ADP
Query on ADP

E, F ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B, C, D, E, F ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, C MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 74.32 α = 112.99
b = 99.96 β = 106.60
c = 109.79 γ = 88.91

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-10-28
  • Released Date: 2017-05-17
  • Deposition author(s): McCallum, M., Tammam, S., Khan, A., Burrows, L., Howell, P.L.

Revision History

  • Version 1_0: 2017-05-17

    Type: Initial release

  • Version 1_1: 2017-09-06

    Type: Author supporting evidence