5TSG

PilB from Geobacter metallireducens bound to ADP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.4 Å
  • R-Value Free: 0.290
  • R-Value Work: 0.273

Literature

Macromolecules
Sequence Display for 5TSG

Classification: ATP-BINDING PROTEIN

Total Structure Weight: 195801.02

Macromolecule Entities
Molecule Chains Length Organism Details
Type IV pilus biogenesis ATPase PilB B, C, D 588 Geobacter metallireducens Mutation: A482G
Gene Name(s): pilB Gmet_1393
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

B, C ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

B, C, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FMT
Query on FMT

D FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

B, C MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 112.12 α = 90.00
b = 112.12 β = 90.00
c = 299.18 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-10-28
  • Released Date: 2017-05-17
  • Deposition author(s): McCallum, M., Tammam, S., Khan, A., Burrows, L., Howell, P.L.

Revision History

  • Version 1_0: 2017-05-17

    Type: Initial release