5TRN

Solution Structure of a DNA Dodecamer with 8-oxoguanine at the 4th position and 5-methylcytosine at the 9th position


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 18
  • Conformers Submitted: 12
  • Selection Criteria: Structures with the Lowest Energy

Literature

Macromolecules
Sequence Display for 5TRN

Classification: DNA

Total Structure Weight: 7386.84

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*GP*CP*(8OG)P*AP*AP*TP*TP*(DMC)P*GP*CP*G)-3') A, B 12 Synthetic construct

Small Molecules
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
8OG
Query on 8OG
A, B DNA LINKING C10 H14 N5 O8 P DG
5CM
Query on 5CM
A, B DNA LINKING C10 H16 N3 O7 P DC

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 18
  • Conformers Submitted: 12
  • Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-10-26
  • Released Date: 2017-06-28
  • Deposition author(s): Hoppins, J.J., Gruber, D.R., Miears, H.L., Endutkin, A.V., Zharkov, D.O., Smirnov, S.L.

Revision History

  • Version 1_0: 2017-06-28

    Type: Initial release

  • Version 1_1: 2017-09-20

    Type: Author supporting evidence