Macromolecules
Sequence Display for 5TIP

Classification: VIRAL PROTEIN

Total Structure Weight: 210247.64

Macromolecule Entities
Molecule Chains Length Organism Details
Major capsid protein A, B, C, D 436 Paramecium bursaria chlorella virus 1 Gene Name(s): A430L
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 9 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HG
Query on HG

A, B, C, D MERCURY (II) ION
Hg
BQPIGGFYSBELGY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
7CV
Query on 7CV

A, B, C, D 6-deoxy-2,3-di-O-methyl-alpha-L-mannopyranose
C8 H16 O5
SXWBIRCAXZNEGK-TVNFTVLESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BGC
Query on BGC

A, B, C, D BETA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-VFUOTHLCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

A, B, C, D ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GLA
Query on GLA

A, B, C, D ALPHA D-GALACTOSE
C6 H12 O6
WQZGKKKJIJFFOK-PHYPRBDBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FUC
Query on FUC

A, B, C, D ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
XXR
Query on XXR

A, B, C, D 6-deoxy-alpha-D-mannopyranose
D-Rhamnose (Synonym)
C6 H12 O5
SHZGCJCMOBCMKK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
RM4
Query on RM4

A, B, C, D 6-deoxy-beta-L-mannopyranose
C6 H12 O5
SHZGCJCMOBCMKK-YJRYQGEOSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
XYP
Query on XYP

A, B, C, D BETA-D-XYLOPYRANOSE
C5 H10 O5
SRBFZHDQGSBBOR-KKQCNMDGSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.176
  • Space Group: P 21 3

Unit Cell:

Length (Å) Angle (°)
a = 188.79 α = 90.00
b = 188.79 β = 90.00
c = 188.79 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2016-10-03
  • Released Date: 2017-10-18
  • Deposition author(s): Klose, T., De Castro, C., Speciale, I., Molinaro, A., Van Etten, J.L., Rossmann, M.G.
  • Previous versions: 1M3Y

Revision History

  • Version 1_0: 2017-10-18

    Type: Initial release