5T8D

Engineered variant of I-OnuI meganuclease targeting the HIV integrase gene; harbors 47 point mutations relative to wild-type I-OnuI


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.182

Literature

Macromolecules
Sequence Display for 5T8D

Classification: HYDROLASE / DNA

Total Structure Weight: 50521.32


Macromolecule Entities
Molecule Chains Length Organism Details
I-OnuI_e-vHIVInt_v2 A 296 Synthetic construct
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (26-MER) B 26 Synthetic construct
DNA (26-MER) C 26 Synthetic construct

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.182
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 39.70 α = 90.00
b = 75.01 β = 90.00
c = 165.16 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-09-07
  • Released Date: 2017-05-03
  • Deposition author(s): Stoddard, B.L., Werther, R., Lambert, A.R.

Revision History

  • Version 1_0: 2017-05-03

    Type: Initial release

  • Version 1_1: 2017-09-27

    Type: Author supporting evidence