5T5M

TUNGSTEN-CONTAINING FORMYLMETHANOFURAN DEHYDROGENASE FROM METHANOTHERMOBACTER WOLFEII, TRIGONAL FORM AT 2.5 A.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.182
  • R-Value Work: 0.158

Literature

Macromolecules
Sequence Display for 5T5M

Classification: OXIDOREDUCTASE

Total Structure Weight: 207509.91

Macromolecule Entities
Molecule Chains Length Organism Details
Tungsten formylmethanofuran dehydrogenase subunit fwdA A 569 Methanothermobacter wolfeii EC#: 1.2.7.12 IUBMB
Details: FwdA contains a carboxylysine at the position 178
Gene Name(s): fwdA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Tungsten formylmethanofuran dehydrogenase subunit fwdB B 432 Methanothermobacter wolfeii EC#: 1.2.7.12 IUBMB
Gene Name(s): fwdB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Tungsten-containing formylmethanofuran dehydrogenase 2 subunit C C 270 Methanothermobacter wolfeii EC#: 1.2.7.12 IUBMB
Gene Name(s): fwdC
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Tungsten formylmethanofuran dehydrogenase subunit fwdD D 130 Methanothermobacter wolfeii EC#: 1.2.7.12 IUBMB
Gene Name(s): fwdD
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Tungsten formylmethanofuran dehydrogenase subunit fwdF F 349 Methanothermobacter wolfeii Gene Name(s): fwdF
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Tungsten formylmethanofuran dehydrogenase subunit fwdG G 82 Methanothermobacter wolfeii Gene Name(s): fwdG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 8 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MGD
Query on MGD

B 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9- TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN- 4-ONE GUANOSINE DINUCLEOTIDE
MOLYBDOPTERIN GUANOSINE DINUCLEOTIDE (Synonym)
C20 H26 N10 O13 P2 S2
VQAGYJCYOLHZDH-ILXWUORBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SF4
Query on SF4

B, F, G IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-VKOJMFJBAC
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
W
Query on W

B TUNGSTEN ION
W
FZFRVZDLZISPFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, D GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

B POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
H2S
Query on H2S

B HYDROSULFURIC ACID
HYDROGEN SULFIDE (Synonym)
H2 S
RWSOTUBLDIXVET-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, C MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
KCX
Query on KCX
A L-PEPTIDE LINKING C7 H14 N2 O4 LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.182
  • R-Value Work: 0.158
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 105.54 α = 90.00
b = 105.54 β = 90.00
c = 340.55 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-08-31
  • Released Date: 2016-10-19
  • Deposition author(s): Wagner, T., Ermler, U., Shima, S.

Revision History

  • 2016-12-21
    Type: Database references