5SZE

Crystal structure of Aquifex aeolicus Hfq-RNA complex at 1.5A


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.172
  • R-Value Work: 0.144

Literature

Macromolecules
Sequence Display for 5SZE

Classification: RNA-binding protein / RNA

Total Structure Weight: 11514.29


Macromolecule Entities
Molecule Chains Length Organism Details
RNA-binding protein Hfq A 83 Aquifex aeolicus Gene Name(s): hfq aq_108 aq_108B
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(P*UP*UP*U)-3') C 6 Unidentified

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MRD
Query on MRD

A (4R)-2-METHYLPENTANE-2,4-DIOL
C6 H14 O2
SVTBMSDMJJWYQN-RXMQYKEDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEG
Query on PEG

A DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.172
  • R-Value Work: 0.144
  • Space Group: P 6

Unit Cell:

Length (Å) Angle (°)
a = 66.19 α = 90.00
b = 66.19 β = 90.00
c = 34.21 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-08-13
  • Released Date: 2017-04-12
  • Deposition author(s): Stanek, K., Patterson, J., Randolph, P.S., Mura, C.

Revision History

  • 2017-04-19
    Type: Database references