5OQP

Crystal structure of the S. cerevisiae condensin Ycg1-Brn1 subcomplex bound to DNA (crystal form I)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.98 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.219

Literature

Macromolecules
Sequence Display for 5OQP

Classification: CELL CYCLE

Total Structure Weight: 129029.87


Macromolecule Entities
Molecule Chains Length Organism Details
Condensin complex subunit 3 A 869 Saccharomyces cerevisiae Mutation: ΔQ499, ΔE500, ΔE501, ΔK502, ΔI503, ΔK504, ΔS505, ΔK506, ΔK507, ΔI508, ΔN509, ΔR510, ΔR511, ΔN512, ΔE513, ΔT514, ΔS515, ΔV516, ΔD517, ΔE518, ΔE519, ΔD520, ΔE521, ΔN522, ΔG523, ΔT524, ΔH525, ΔN526, ΔD527, ΔE528, ΔV529, ΔN530, ΔE531, ΔD532, ΔE533, ΔE534, ΔD535, ΔD536, ΔN537, ΔI538, ΔS539, ΔS540, ΔF541, ΔH542, ΔS543, ΔA544, ΔV545, ΔE546, ΔN547, ΔL548, ΔV549, ΔQ550, ΔG551, ΔN552, ΔG553, ΔN554, ΔV555
Details: loop deletion; 499-555
Gene Name(s): YCG1 YCS5 YDR325W
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Condensin complex subunit 2 B 152 Saccharomyces cerevisiae Details: 384-529
Gene Name(s): BRN1 YBL097W YBL0830
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*AP*TP*GP*TP*GP*TP*AP*GP*CP*TP*AP*CP*AP*CP*AP*TP*C)-3') C, D 18 Synthetic construct

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1PE
Query on 1PE

A PENTAETHYLENE GLYCOL
PEG400 (Synonym)
C10 H22 O6
JLFNLZLINWHATN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.98 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.219
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 80.14 α = 90.00
b = 114.83 β = 90.00
c = 155.21 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-08-14
  • Released Date: 2017-10-18
  • Deposition author(s): Kschonsak, M., Hassler, M., Haering, C.H.

Revision History

  • Version 1_0: 2017-10-18

    Type: Initial release

  • Version 1_1: 2017-11-01

    Type: Database references