5ODM

NtiPr polyamide in complex with 5'CGATGTACTACG3


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 2000
  • Conformers Submitted: 10
  • Selection Criteria: Clustering

Literature

Macromolecules
Sequence Display for 5ODM

Classification: DNA

Total Structure Weight: 8580.42

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3') A, B 12 Homo sapiens

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
9T8
Query on 9T8

A 3-(3-azaniumylpropanoylamino)propyl-dimethyl- azanium
C8 H21 N3 O
CKBSAZMXMFCAGN-UHFFFAOYSA-P
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
9U2
Query on 9U2

A 5-propan-2-yl-1,3-thiazole-4-carbaldehyde
C7 H9 N O S
ZNCIEQFZRKIVOL-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IMT
Query on IMT

A 4-AMINO-(1-METHYLIMIDAZOLE)-2-CARBOXYLIC ACID
C5 H7 N3 O2
PPQDQYBXCYQCNH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PYB
Query on PYB

A 4-AMINO-(1-METHYLPYRROLE)-2-CARBOXYLIC ACID
C6 H8 N2 O2
MUEOQEUSJMFYHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ABU
Query on ABU

A GAMMA-AMINO-BUTANOIC ACID
GAMMA(AMINO)-BUTYRIC ACID (Synonym)
C4 H9 N O2
BTCSSZJGUNDROE-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
DCZ
Query on DCZ
A, B DNA OH 5 prime terminus C9 H13 N3 O4 --

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 2000
  • Conformers Submitted: 10
  • Selection Criteria: clustering

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-07-06
  • Released Date: 2017-12-06
  • Deposition author(s): Padroni, G., Parkinson, J., Burley, G.A.

Revision History

  • Version 1_0: 2017-12-06

    Type: Initial release