5ODL

Single-stranded DNA-binding protein from bacteriophage Enc34 in complex with ssDNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.56 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.141

Literature

Macromolecules
Sequence Display for 5ODL

Classification: DNA BINDING PROTEIN

Total Structure Weight: 23312.29


Macromolecule Entities
Molecule Chains Length Organism Details
single-stranded DNA-binding protein A 180 Enterobacter phage enc34 Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
oligo(T) D 9 Synthetic construct

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.56 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.141
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 43.49 α = 90.00
b = 43.49 β = 90.00
c = 179.11 γ = 120.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-07-05
  • Released Date: 2017-10-25
  • Deposition author(s): Cernooka, E., Rumnieks, J., Kazaks, A., Tars, K.

Revision History

  • Version 1_0: 2017-10-25

    Type: Initial release