5O6I

Structures and dynamics of mesophilic variants from the homing endonuclease I-DmoI


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.196

Literature

Macromolecules
Sequence Display for 5O6I

Classification: DNA BINDING PROTEIN

Total Structure Weight: 116737.91


Macromolecule Entities
Molecule Chains Length Organism Details
Homing endonuclease I-DmoI A, F, K 200 Desulfurococcus mucosus EC#: 3.1 IUBMB
Mutation: I52F, A92T, F101C
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (25-MER) C, G, L 25 Synthetic construct
DNA (25-MER) D, I, N 25 Synthetic construct

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MN
Query on MN

A, F, K MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, G CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.196
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 107.00 α = 90.00
b = 70.48 β = 119.81
c = 107.32 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-06-06
  • Released Date: 2017-12-06
  • Deposition author(s): Molina, R., Marcaida, M.J.

Revision History

  • Version 1_0: 2017-12-06

    Type: Initial release