5O6B

Structure of ScPif1 in complex with GGGTTTT and ADP-AlF4


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.03 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.193

Literature

Macromolecules
Sequence Display for 5O6B

Classification: HYDROLASE

Total Structure Weight: 129422.84


Macromolecule Entities
Molecule Chains Length Organism Details
ATP-dependent DNA helicase PIF1 A, B 545 Saccharomyces cerevisiae EC#: 3.6.4.12 IUBMB
Gene Name(s): PIF1 Gene View TST1 YML061C YM9958.01C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*GP*GP*TP*TP*T)-3') C, D 8 Saccharomyces cerevisiae

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A, B ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ALF
Query on ALF

A, B TETRAFLUOROALUMINATE ION
Al F4
UYOMQIYKOOHAMK-UHFFFAOYSA-J
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

B PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.03 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.193
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 75.25 α = 90.00
b = 88.37 β = 90.00
c = 187.70 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-06-06
  • Released Date: 2017-12-13
  • Deposition author(s): LU, K.Y., CHEN, W.F., RETY, S., LIU, N.N., XU, X.G.

Revision History

  • Version 1_0: 2017-12-13

    Type: Initial release