5O69

The structure of the thermobifida fusca guanidine III riboswitch with agmatine.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.32 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.243

Literature

Macromolecules
Sequence Display for 5O69

Classification: RNA

Total Structure Weight: 27036.10

Macromolecule Entities
Molecule Chains Length Organism Details
RNA (41-MER) A 41 Thermobifida fusca
RNA (37-MER) B 41 Thermobifida fusca

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AG2
Query on AG2

A AGMATINE
(4-AMINOBUTYL)GUANIDINE (Synonym)
C5 H14 N4
QYPPJABKJHAVHS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CBV
Query on CBV
A, B RNA LINKING C9 H13 Br N3 O8 P C

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.32 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.243
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 83.89 α = 90.00
b = 83.89 β = 90.00
c = 67.23 γ = 120.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-06-06
  • Released Date: 2017-10-18
  • Deposition author(s): Huang, L., Wang, J., Lilley, D.M.J.

Revision History

  • Version 1_0: 2017-10-18

    Type: Initial release