5NW9

Crystal structure of the complex of Tdp1 with duplex DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.04 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.232

Literature

Macromolecules
Sequence Display for 5NW9

Classification: HYDROLASE

Total Structure Weight: 112218.21


Macromolecule Entities
Molecule Chains Length Organism Details
Tyrosyl-DNA phosphodiesterase 1 A, B 485 Homo sapiens EC#: 3.1.4 IUBMB
Fragment: delta 1-148
Mutation: D322N, M328T, F548L
Gene Name(s): TDP1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(P*TP*GP*CP*GP*CP*AP*GP*TP*A)-3') C 9 Synthetic construct


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.04 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.232
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 108.01 α = 90.00
b = 195.31 β = 90.00
c = 50.83 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-05-05
  • Released Date: 2018-01-10
  • Deposition author(s): Richardson, J.M., Ruksenaite, E., Morris, E.R.

Revision History

  • Version 1_0: 2018-01-10

    Type: Initial release

  • Version 1_1: 2018-01-17

    Type: Database references