5NT5

The effect of Berenil and Cacodylateon the crystal structure of d(CGTGAATTCACG)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.312
  • R-Value Work: 0.245

Literature

Macromolecules
Sequence Display for 5NT5

Classification: DNA

Total Structure Weight: 7484.79

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*GP*TP*GP*AP*AP*TP*TP*CP*AP*CP*G)-3') A, B 12 Unidentified

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CAC
Query on CAC

A CACODYLATE ION
dimethylarsinate (Synonym)
C2 H6 As O2
OGGXGZAMXPVRFZ-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.312
  • R-Value Work: 0.245
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 25.04 α = 90.00
b = 41.53 β = 90.00
c = 64.87 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-04-27
  • Released Date: 2017-09-20
  • Deposition author(s): Sbirkova, H.I., Shivachev, B.L.

Revision History

  • Version 1_0: 2017-09-20

    Type: Initial release