5NS4

Crystal structures of Cy3 cyanine fluorophores stacked onto the end of double-stranded RNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.283
  • R-Value Work: 0.260

Literature

Macromolecules
Sequence Display for 5NS4

Classification: RNA BINDING PROTEIN

Total Structure Weight: 62852.34


Macromolecule Entities
Molecule Chains Length Organism Details
50S ribosomal protein L5 A, B 178 Thermus thermophilus Gene Name(s): rplE rpl5
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (34-MER) C, D 33 Thermus thermophilus

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
96T
Query on 96T

C 3-[(2~{Z})-2-[(~{E})-3-[3,3-dimethyl-1-(3- oxidanylpropyl)indol-1-ium-2-yl]prop-2-enylidene]- 3,3-dimethyl-indol-1-yl]propan-1-ol
C29 H37 N2 O2
RABDLLNSNYDNIC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.283
  • R-Value Work: 0.260
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 93.76 α = 90.00
b = 122.43 β = 90.00
c = 51.01 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-04-25
  • Released Date: 2017-12-20
  • Deposition author(s): Liu, Y.J., Lilley, D.M.J.

Revision History

  • Version 1_0: 2017-12-20

    Type: Initial release