5MLU

Crystal structure of the PFV GAG CBS bound to a mononucleosome


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.208

Literature

Macromolecules
Sequence Display for 5MLU

Classification: DNA BINDING PROTEIN

Total Structure Weight: 177476.78


Macromolecule Entities
Molecule Chains Length Organism Details
Histone H3.2 A, E 97 Xenopus laevis Mutation: G102A
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Histone H4 B, F 84 Xenopus laevis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Histone H2A type 1 C, G 105 Xenopus laevis Mutation: G99R
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Histone H2B D 93 Xenopus laevis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Histone H2B H 94 Xenopus laevis Gene Name(s):
PFV GAG peptide M 17 Simian foamy virus Gene Name(s): gag
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (145-MER) I 145 Escherichia coli Widom 601
DNA (145-MER) J 145 Escherichia coli Widom 601

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MN
Query on MN

A, I, J MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.208
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 107.26 α = 90.00
b = 109.45 β = 90.00
c = 175.82 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-12-07
  • Released Date: 2017-05-10
  • Deposition author(s): Pye, V.E., Maskell, D.P., Lesbats, P., Cherepanov, P.

Revision History

  • 2017-05-24
    Type: Database references
  • 2017-05-31
    Type: Database references