5MJV

Rebuild and re-refined model for Human Parechovirus 1

Structural Biology Knowledgebase: 5MJV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.09 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.258

Literature

Macromolecules
Sequence Display for 5MJV

Classification: VIRUS

Total Structure Weight: 88235.17


Macromolecule Entities
Molecule Chains Length Organism Details
CAPSID SUBUNIT VP1 A 234 Human parechovirus EC#: 2.7.7.48 IUBMB 3.4.22.28 IUBMB 3.6.1.15 IUBMB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
CAPSID SUBUNIT VP3 B 253 Human parechovirus EC#: 2.7.7.48 IUBMB 3.4.22.28 IUBMB 3.6.1.15 IUBMB
Gene Name(s):
CAPSID SUBUNIT VP0 C 289 Human parechovirus EC#: 2.7.7.48 IUBMB 3.4.22.28 IUBMB 3.6.1.15 IUBMB
Gene Name(s):
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*GP*UP*UP*UP*UP*U)-3') D 6 Human parechovirus


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.09 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.258
  • Space Group: P 63 2 2

Unit Cell:

Length (Å) Angle (°)
a = 399.50 α = 90.00
b = 399.50 β = 90.00
c = 332.86 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-12-01
  • Released Date: 2017-01-11
  • Deposition author(s): Shakeel, S., Dykeman, E.C., White, S.J., Ora, A., Cockburn, J.J.B., Butcher, S.J., Stockley, P.G., Twarock, R.
  • Previous versions: 5M74

Revision History

  • 2017-03-08
    Type: Citation | Details: Citation