5M68

AT-rich DNA dodecamer with extra helical guanine-nickel coordination


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.64 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.227

Literature

Macromolecules
Sequence Display for 5M68

Classification: DNA

Total Structure Weight: 22614.12

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*GP*AP*AP*TP*TP*AP*AP*TP*TP*CP*G)-3') A, B, C... , D, E, F A, B, C, D, E, F 12 Unidentified Dodecamer with extra helical guanine-nickel cordinations

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NI
Query on NI

A, B, C, D, E, F NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.64 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.227
  • Space Group: P 32

Unit Cell:

Length (Å) Angle (°)
a = 44.78 α = 90.00
b = 44.78 β = 90.00
c = 99.01 γ = 120.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2016-10-24
  • Released Date: 2017-11-15
  • Deposition author(s): Campos, J.L., Saperas, N., Acosta-Reyes, F.J., Pagan, M.

Revision History

  • Version 1_0: 2017-11-15

    Type: Initial release