5LYV

The crystal structure of 7SK 5'-hairpin - Osmium derivative


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 5LYV

Classification: RNA

Total Structure Weight: 37777.93

Macromolecule Entities
Molecule Chains Length Organism Details
RNA (57-MER) A, B 57 Homo sapiens

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CCC
Query on CCC

A, B CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE
C9 H13 N3 O10 P2
IZJNKZMLZILGRK-XVFCMESISA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
OHX
Query on OHX

A osmium (III) hexammine
osmium(6+) hexaazanide (Synonym)
H12 N6 Os
OWCQTVJQFLTQTE-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CCC
Query on CCC
A, B RNA LINKING C9 H13 N3 O10 P2 C

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.199
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 47.12 α = 90.00
b = 47.74 β = 105.20
c = 68.94 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-09-28
  • Released Date: 2017-01-25
  • Deposition author(s): Martinez-Zapien, D., Legrand, P., McEwen, A.G., Pasquali, S., Dock-Bregeon, A.-C.

Revision History

  • 2017-05-03
    Type: Database references