5LUX

Homeobox transcription factor CDX1 bound to methylated DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.23 Å
  • R-Value Free: 0.299
  • R-Value Work: 0.241

Literature

Macromolecules
Sequence Display for 5LUX

Classification: TRANSCRIPTION

Total Structure Weight: 37274.32


Macromolecule Entities
Molecule Chains Length Organism Details
Homeobox protein CDX-1 K, L 63 Homo sapiens Gene Name(s): CDX1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(P*TP*TP*GP*TP*GP*TP*TP*TP*TP*AP*(5CM)P*GP*AP*CP*CP*TP*C)-3') A 17 Homo sapiens
DNA (5'-D(P*TP*TP*GP*TP*GP*TP*TP*TP*TP*AP*(5CM)P*GP*AP*CP*CP*TP*CP*C)-3') B 18 Homo sapiens
DNA (5'-D(P*GP*AP*GP*GP*TP*(5CM)P*GP*TP*AP*AP*AP*AP*CP*AP*CP*AP*A)-3') F 17 Homo sapiens
DNA (5'-D(P*GP*GP*AP*GP*GP*TP*(5CM)P*GP*TP*AP*AP*AP*AP*CP*AP*CP*AP*A)-3') E 18 Homo sapiens

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
5CM
Query on 5CM
A, B, E, F DNA LINKING C10 H16 N3 O7 P DC

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.23 Å
  • R-Value Free: 0.299
  • R-Value Work: 0.241
  • Space Group: I 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 64.65 α = 90.00
b = 45.56 β = 93.79
c = 116.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-09-12
  • Released Date: 2017-05-17
  • Deposition author(s): Morgunova, E., Popov, A., Taipale, J.

Revision History

No revisions since initial release