5LR5

N6-methyladenine is accommodated in a conventional A-U basepair


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.287
  • R-Value Work: 0.247

Literature

Macromolecules
Sequence Display for 5LR5

Classification: RNA

Total Structure Weight: 13175.55

Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*GP*GP*(6MZ)P*CP*UP*AP*GP*UP*(CBV)P*C)-3') A, B, C, D 10 Homo sapiens

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

C SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
6MZ
Query on 6MZ
A, B, C, D RNA LINKING C11 H16 N5 O7 P A
CBV
Query on CBV
A, B, C, D RNA LINKING C9 H13 Br N3 O8 P C

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.287
  • R-Value Work: 0.247
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 50.47 α = 90.00
b = 50.47 β = 90.00
c = 108.63 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-08-18
  • Released Date: 2017-06-21
  • Deposition author(s): Huang, L., Lilley, D.M.J.

Revision History

  • 2017-06-28
    Type: Database references