5LJ4

Crystal structure of DNA duplex containing ZP base pair


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.17 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.220

Literature

Macromolecules
Sequence Display for 5LJ4

Classification: DNA

Total Structure Weight: 7579.15

Macromolecule Entities
Molecule Chains Length Organism Details
ODN2 A, B 12 Homo sapiens

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
1WA
Query on 1WA
A, B DNA LINKING C10 H16 N5 O7 P --
1W5
Query on 1W5
A, B DNA linking C10 H14 N3 O9 P --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.17 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.220
  • Space Group: H 3

Unit Cell:

Length (Å) Angle (°)
a = 41.70 α = 90.00
b = 41.70 β = 90.00
c = 99.93 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-07-17
  • Released Date: 2017-05-03
  • Deposition author(s): Agnew, C.R.J., Brady, R.L.

Revision History

  • Version 1_0: 2017-05-03

    Type: Initial release

  • Version 1_1: 2017-05-17

    Type: Database references

  • Version 1_2: 2017-08-30

    Type: Author supporting evidence