5LFS

Lambda-[Ru(bpy)2(dppz)]2+ bound to brominated DNA

Structural Biology Knowledgebase: 5LFS SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.192
  • R-Value Work: 0.171

Literature

Macromolecules
Sequence Display for 5LFS

Classification: DNA

Total Structure Weight: 3251.07

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*CP*CP*G)-3') A 4 Synthetic construct
DNA (5'-D(*(CBR)P*GP*GP*C)-3') C 4 Synthetic construct

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
R1Z
Query on R1Z

C Delta-[Ru(bpy)2dppz]2+
C38 H26 N8 Ru
NGWQAIWPRVFOPE-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BA
Query on BA

A BARIUM ION
Ba
XDFCIPNJCBUZJN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

C CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
5BT
Query on 5BT
C NON-POLYMER C9 H12 Br N3 O4 --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.192
  • R-Value Work: 0.171
  • Space Group: P 64 2 2

Unit Cell:

Length (Å) Angle (°)
a = 66.90 α = 90.00
b = 66.90 β = 90.00
c = 36.02 γ = 120.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2016-07-04
  • Released Date: 2017-02-15
  • Deposition author(s): Hall, J.P., Cardin, C.J.
  • Previous versions: 4IZR

Revision History

  • 2017-04-19
    Type: Citation | Details: Citation