5LCL

STRUCTURE OF the RAD14 DNA-binding domain IN COMPLEX WITH C8-aminofluorene- GUANINE CONTAINING DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.217

Literature

Macromolecules
Sequence Display for 5LCL

Classification: DNA BINDING PROTEIN

Total Structure Weight: 66813.63


Macromolecule Entities
Molecule Chains Length Organism Details
DNA repair protein RAD14 A 119 Saccharomyces cerevisiae Gene Name(s): RAD14 YMR201C YM8325.02C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA repair protein RAD14 B 371 Saccharomyces cerevisiae Gene Name(s): RAD14 YMR201C YM8325.02C
Macromolecule Entities
Molecule Chains Length Organism Details
GCTCTAC(8AF)TCATCA C 15 Saccharomyces
DNA (5'-D(*GP*TP*GP*AP*TP*GP*AP*CP*GP*TP*AP*GP*AP*G)-3') D 15 Saccharomyces

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
8AF
Query on 8AF
C NON-POLYMER C23 H23 N6 O6 P --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.217
  • Space Group: P 41

Unit Cell:

Length (Å) Angle (°)
a = 53.21 α = 90.00
b = 53.21 β = 90.00
c = 130.96 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-06-22
  • Released Date: 2017-05-10
  • Deposition author(s): Schneider, S., Carell, T., Ebert, C., Simon, N.

Revision History

  • Version 1_0: 2017-05-10

    Type: Initial release

  • Version 1_1: 2017-06-07

    Type: Database references

  • Version 1_2: 2017-07-26

    Type: Database references