5KTV

Mis-pairing of unnatural base Z-G DNA duplex at pH 8.5


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.180

Literature

Macromolecules
Sequence Display for 5KTV

Classification: DNA

Total Structure Weight: 7775.51

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(P*GP*CP*GP*AP*AP*TP*TP*(1W5)P*GP*CP*G)-3') A, B 12 Synthetic construct

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
1W5
Query on 1W5
A, B DNA linking C10 H14 N3 O9 P --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.180
  • Space Group: H 3

Unit Cell:

Length (Å) Angle (°)
a = 40.92 α = 90.00
b = 40.92 β = 90.00
c = 102.15 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-07-12
  • Released Date: 2017-05-03
  • Deposition author(s): Ahmad Sobri, A.F., Brady, R.L.

Revision History

No revisions since initial release