5KP2

Beta-ketoacyl-ACP synthase III -2 (FabH2) (C113A) from Vibrio Cholerae cocrystallized with octanoyl-CoA: hydrolzed ligand

Structural Biology Knowledgebase: 5KP2 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.194

Literature

Macromolecules
Sequence Display for 5KP2

Classification: TRANSFERASE

Total Structure Weight: 78983.98

Macromolecule Entities
Molecule Chains Length Organism Details
3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 A, B 362 Vibrio cholerae EC#: 2.3.1.180 IUBMB
Mutation: C113A
Gene Name(s): fabH2 VC_A0751
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
COA
Query on COA

B COENZYME A
C21 H36 N7 O16 P3 S
RGJOEKWQDUBAIZ-IBOSZNHHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
OCA
Query on OCA

B OCTANOIC ACID (CAPRYLIC ACID)
C8 H16 O2
WWZKQHOCKIZLMA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 84.67 α = 90.00
b = 61.24 β = 94.67
c = 71.52 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-07-01
  • Released Date: 2016-07-20
  • Deposition author(s): Hou, J., Zheng, H., Grabowski, M., Anderson, W.F., Minor, W., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

No revisions since initial release