5KCP

horse liver S48T alcohol dehydrogenase complexed with NAD and pentafluorobenzyl alcohol

Structural Biology Knowledgebase: 5KCP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.1 Å
  • R-Value Free: 0.138
  • R-Value Work: 0.118

Literature

Macromolecules
Sequence Display for 5KCP

Classification: OXIDOREDUCTASE

Total Structure Weight: 82588.14

Macromolecule Entities
Molecule Chains Length Organism Details
Alcohol dehydrogenase E chain A, B 374 Equus caballus EC#: 1.1.1.1 IUBMB
Mutation: S48T
Details: horse liver alcohol dehydrogenase E isoenzyme with S48T substitution
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAJ
Query on NAJ

A, B NICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM)
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PFB
Query on PFB

A, B 2,3,4,5,6-PENTAFLUOROBENZYL ALCOHOL
C7 H3 F5 O
PGJYYCIOYBZTPU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MRD
Query on MRD

A, B (4R)-2-METHYLPENTANE-2,4-DIOL
C6 H14 O2
SVTBMSDMJJWYQN-RXMQYKEDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.1 Å
  • R-Value Free: 0.138
  • R-Value Work: 0.118
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 44.44 α = 91.87
b = 51.59 β = 103.06
c = 92.56 γ = 110.33

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-06-06
  • Released Date: 2016-06-29
  • Deposition author(s): Plapp, B.V.

Revision History

No revisions since initial release