5JNX

The 6.6 A cryo-EM structure of the full-length human NPC1 in complex with the cleaved glycoprotein of Ebola virus


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.56 Å
  • Aggregation State: Particle
  • Reconstruction Method: Single Particle

Literature

Macromolecules
Sequence Display for 5JNX

Classification: MEMBRANE PROTEIN

Total Structure Weight: 245018.05

Macromolecule Entities
Molecule Chains Length Organism Details
Niemann-Pick C1 protein A 1278 Homo sapiens Gene Name(s): NPC1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Envelope glycoprotein C, E, G 158 Zaire ebolavirus Fragment: UNP residues 32-188
Mutation: T42V
Gene Name(s): GP
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Envelope glycoprotein D, F, H 130 Zaire ebolavirus Fragment: UNP residues 509-632
Gene Name(s): GP

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, D, F, H N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

A ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

A BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.56 Å
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-05-01
  • Released Date: 2016-06-15
  • Deposition author(s): Gong, X., Qian, H.W., Zhou, X.H., Wu, J.P., Wan, T., Shi, Y., Gao, F., Zhou, Q., Yan, N.

Revision History

No revisions since initial release