5J7M

Crystal structure of Cupin 2 conserved barrel domain protein from Kribbella flavida DSM 17836


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.07 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.180

Literature

Macromolecules
Sequence Display for 5J7M

Classification: UNKNOWN FUNCTION

Total Structure Weight: 27820.17

Macromolecule Entities
Molecule Chains Length Organism Details
Cupin 2 conserved barrel domain protein A, B 123 Kribbella flavida Fragment: residues 1-120
Details: N-terminal cloning artifact SNA
Gene Name(s): Kfla_2934
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PEG
Query on PEG

A, B DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NI
Query on NI

A, B NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EOH
Query on EOH

A, B ETHANOL
C2 H6 O
LFQSCWFLJHTTHZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.07 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.180
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 61.16 α = 90.00
b = 61.16 β = 90.00
c = 120.97 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-04-06
  • Released Date: 2016-04-27
  • Deposition author(s): Chang, C., Cuff, M., Chhor, G., Endres, M., Joachimiak, A.

Revision History

  • 2016-08-17
    Type: Database references, Structure summary